Want a tasty, sneaky way to sneak more veggies into your day? These chocolate veggie muffins are filled with wholesome ingredients, sneaky veggies, and plenty of rich chocolate flavor. Moist, fluffy, and protein-rich, they’re the perfect breakfast or snack—even picky eaters won’t notice the veggies!
You’d never guess these fudgy, chocolatey muffins are hiding carrots, zucchini, and spinach. They’re sweet, satisfying, and loaded with nutrients. Plus, they store well and are great for meal prep.

Table of Contents
Why You’ll Love These Chocolate Veggie Muffins
A double chocolate, veggie-packed win
These veggie chocolate muffins hit that perfect balance of indulgent and nutritious. Thanks to cocoa powder and melty mini chocolate chips, they taste rich and decadent, while grated veggies stay hidden, adding moisture and nutrition.
What makes them stand out:
- Double chocolate flavor that feels like dessert
- Hidden veggies like zucchini, carrots, and spinach
- Rich, fudgy texture with an added protein boost from Greek yogurt
- Naturally sweetened with honey
- Meal prep and freezer-friendly
They’re perfect for busy mornings, healthy snacks, or a sneaky treat for kids.
Veggies in muffins? It works!
The secret to these chocolate veggie muffins is how well the veggies disappear into the batter. The grated carrots and zucchini melt into the crumb, while spinach adds nutrients without changing the taste.
Love protein-packed muffins? Don’t miss our cottage cheese muffins — another easy, nutritious option to try.
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Healthy Chocolate Veggie Muffins
- Total Time: 30 minutes
- Yield: 12 muffins 1x
- Diet: Vegetarian
Description
These chocolate veggie muffins are rich, fudgy, and packed with hidden vegetables like zucchini, carrots, and spinach. Perfect for a high-protein breakfast or healthy snack, they’re moist, naturally sweetened, and freezer-friendly.
Ingredients
Dry Ingredients:
1 ½ cups white whole wheat flour
⅓ cup Dutch-process cocoa powder
1 teaspoon baking powder
1 teaspoon baking soda
½ teaspoon salt
½ to ⅔ cup mini chocolate chips (plus more for topping)
Wet Ingredients:
1 cup grated carrots
1 cup grated zucchini
1 cup baby spinach, chopped
½ cup plain Greek yogurt
½ cup honey
¼ cup avocado oil
2 large eggs
1 teaspoon vanilla extract
Instructions
1. Preheat oven to 350°F (175°C). Line or grease a 12-cup muffin tin.
2. In a bowl, whisk together the flour, cocoa powder, baking powder, baking soda, salt, and chocolate chips.
3. In another bowl, whisk together Greek yogurt, honey, oil, eggs, and vanilla.
4. Fold in grated carrots, zucchini, and spinach.
5. Add wet mixture to dry and gently mix until just combined.
6. Divide batter among muffin cups and top with extra chocolate chips.
7. Bake for 18–22 minutes until set. Cool 5 minutes, then transfer to wire rack.
Notes
Squeeze grated zucchini to prevent excess moisture.
Muffins keep for 2 days at room temp, 4 days in fridge, or 2 months frozen.
Reheat in microwave for 15–30 seconds for a warm, fudgy muffin.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Category: Breakfast, Snack
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 170
- Sugar: 10g
- Sodium: 220mg
- Fat: 8g
- Saturated Fat: 3g
- Unsaturated Fat: 5g
- Trans Fat: 0g
- Carbohydrates: 18g
- Fiber: 2g
- Protein: 6g
- Cholesterol: 50mg
Ingredients & Pro Tips for Perfectly Moist Chocolate Veggie Muffins
Simple, wholesome ingredients for the perfect muffins
These veggie chocolate muffins come together with pantry staples, nutrient-packed veggies, and just the right amount of sweetness.
Dry Ingredients:
- 1 ½ cups white whole wheat flour
- ⅓ cup Dutch-process cocoa powder — for a deep, rich chocolate flavor
- 1 teaspoon baking powder
- 1 teaspoon baking soda
- ½ teaspoon salt
- ½ to ⅔ cup mini chocolate chips, with extra for sprinkling on top
Wet Ingredients:
- 1 cup grated carrots
- 1 cup grated zucchini
- 1 cup baby spinach, finely chopped
- ½ cup plain Greek yogurt — adds protein and keeps the muffins moist
- ½ cup honey for natural sweetness
- ¼ cup avocado oil (or any neutral oil you prefer)
- 2 large eggs
- 1 teaspoon vanilla extract
Hidden veggies like spinach, zucchini, and carrots give these muffins a nutritional boost without affecting the flavor. The Greek yogurt keeps the muffins moist, while honey and mini chocolate chips satisfy your sweet tooth.
Tips for fudgy, rich, healthy muffins
- For the best texture, be sure to squeeze out any excess moisture from the grated zucchini
- For extra chocolate flavor, stir in more mini chocolate chips on top before baking.
- Don’t overmix the batter—gentle folding keeps these muffins light and fluffy.
- Opt for Dutch-process cocoa powder to achieve a deeper, richer chocolate flavor.
- Want more savory muffin inspiration? Our cottage cheese muffins savory are another protein-packed option to try.
Step-by-Step How to Make Chocolate Veggie Muffins
Foolproof process for rich, fudgy, veggie-packed muffins
Making these chocolate veggie muffins is simple, even if you’re new to baking. With a few easy steps and some sneaky veggies, you’ll have moist, delicious muffins ready in no time.
Step 1: Prep your veggies
Use the fine side of a grater to shred the carrots and zucchini.
- Lightly squeeze the grated zucchini with a paper towel to remove excess moisture.
- Chop the baby spinach finely so it mixes smoothly into the batter.
The veggies help create that moist, rich texture, so don’t skip them!
Step 2: Mix the dry ingredients
In a large bowl, whisk together:
- 1 ½ cups white whole wheat flour
- ⅓ cup Dutch-process cocoa powder
- 1 teaspoon baking powder
- 1 teaspoon baking soda
- ½ teaspoon salt
For that indulgent double chocolate flavor, stir in ½ to ⅔ cup mini chocolate chips, saving a few for topping.
Step 3: Combine the wet ingredients
In a separate bowl, whisk together:
- ½ cup plain Greek yogurt
- ½ cup honey
- ¼ cup avocado oil
- 2 large eggs
- 1 teaspoon vanilla extract
Gently fold in the grated carrots, zucchini, and chopped spinach until well combined.
Step 4: Bring it all together
Add the wet mixture to the dry ingredients. Gently fold the batter until just combined. Take care not to overmix — this helps keep the muffins light and tender.
Step 5: Bake to fudgy perfection
Preheat the oven to 350°F (175°C). Line a 12-cup muffin tin with liners or lightly grease the cups. Divide the batter evenly among the muffin cups, filling each about ¾ full. Sprinkle extra mini chocolate chips on top for a melty, chocolatey finish.
Bake for about 20 min, until a toothpick inserted in the center comes out clean or with a few moist crumbs. Then let the muffins cool in the pan for about 5 min before transferring them to a wire rack to cool completely.
Love easy, healthy muffins? Be sure to explore our latest recipe inspirations on Pinterest — packed with delicious, protein-rich breakfast ideas.

Health Benefits & Why These Chocolate Veggie Muffins Are Perfect for Meal Prep
Hidden veggies, high protein, and seriously delicious
These chocolate veggie muffins are the ultimate win-win for anyone looking to eat better without sacrificing flavor. They sneak in veggies, boost protein, and still taste like rich, fudgy chocolate muffins.
What makes them a healthy choice:
- Sneaky veggies like carrots, zucchini, and spinach add fiber, vitamins, and minerals
- Greek yogurt provides a protein boost for lasting energy
- Sweetened naturally with honey instead of refined sugar
- Made with whole wheat flour for extra fiber and nutrients
- Avocado oil delivers healthy fats for a moist, tender crumb
They’re proof that muffins can be both nutritious and indulgent—perfect for kids, picky eaters, or anyone craving a healthier treat.
Meal prep made easy
Whether you’re trying to simplify breakfast, stock your freezer with snacks, or pack nutritious lunchbox options, these chocolate veggie muffins are a meal prep dream:
- Stay fresh in the fridge for up to 4 days
- Freeze beautifully for up to 2 months
- Reheat easily in the microwave for quick breakfasts or snacks
Make a double batch and you’ll have protein-rich, veggie-packed muffins ready whenever hunger strikes.
Storage, Freezing & Tips for the Best Chocolate Veggie Muffins
How to store your muffins for maximum freshness
These chocolate veggie muffins stay moist and delicious for days, making them perfect for meal prep:
Room temperature:
- You can keep muffins for up to 2 days in an airtight container
- Place a paper towel in the container to absorb excess moisture
Fridge storage:
- Keep muffins in an airtight container in the fridge for up to 4 days
- Reheat in the microwave for 15–20 seconds for a warm, fudgy texture
Freezer-friendly:
- Wrap muffins individually or store in a freezer-safe bag or container
- Freeze for up to 2 months
- Thaw it from the freezer overnight in the refrigerator, or microwave it for about 40 seconds
Expert tips for moist, fluffy chocolate veggie muffins
- Don’t skip squeezing the grated zucchini—it prevents soggy muffins
- Be gentle when mixing to avoid dense muffins
- For a deeper chocolate flavor, use Dutch cocoa powder
- Honey keeps them naturally sweet without refined sugar
- For a delicious melted chocolate on top, add mini chocolate chips
- Finely chop spinach so it blends right in without being noticeable
Want more simple, high-protein breakfast ideas? Check out our latest articles on Medium for healthy recipes and cooking tips.
Frequently Asked Questions About Chocolate Veggie Muffins
What veggies can I hide in chocolate muffins?
In these chocolate veggie muffins, you can easily hide grated zucchini, grated carrots, and finely chopped spinach. They blend right into the batter and add moisture without changing the chocolate flavor.
What’s the secret to moist muffins?
The key to moist chocolate veggie muffins is a combination of Greek yogurt, honey, oil, and moisture-rich veggies like zucchini and carrots. Squeezing the zucchini removes excess water to keep the texture perfect—not soggy.
Are veggie muffins healthy?
Yes! Chocolate veggie muffins are a healthier option because they’re packed with hidden vegetables, whole wheat flour, Greek yogurt for protein, and naturally sweetened with honey. They’re rich in nutrients while still tasting like a treat.
How should I store chocolate veggie muffins?
You can store the cakes for up to 2 days in an airtight container at room temperature, or in the refrigerator for up to 4 days. For long-term storage, you can freeze them for up to two months and reheat them in the microwave for quick breakfasts.
What ingredient makes muffins more fluffy?
Baking powder, baking soda, and gentle mixing help keep chocolate veggie muffins light and fluffy. Overmixing can make muffins dense, so stir until just combined.
What vegetables can you put in a muffin?
You can use zucchini, carrots, spinach, sweet potatoes, or even pumpkin in muffins. For these chocolate veggie muffins, zucchini and carrots create a moist, rich texture, while spinach adds extra nutrients without altering the flavor.
Looking for other high-protein muffin options? Try our egg cottage cheese muffins for a quick, savory breakfast.
Why Chocolate Veggie Muffins Deserve a Spot in Your Meal Prep Routine
These chocolate veggie muffins prove that you don’t have to sacrifice flavor to sneak more veggies into your day. They’re rich, fudgy, and packed with hidden vegetables, making them perfect for breakfast, snacks, or a healthier dessert.
With wholesome ingredients like zucchini, carrots, spinach, and Greek yogurt, these muffins are not only satisfying but also full of nutrients and protein. Whether you enjoy them fresh from the oven or grab one from the freezer on a busy morning, they deliver that decadent chocolate flavor with a nutritious twist.
They store well, freeze beautifully, and reheat in seconds—ideal for anyone looking for easy, high-protein snacks or a sweet treat that feels a little more wholesome.
Ready to try these chocolate veggie muffins? You won’t believe how rich, moist, and delicious they turn out—with all the hidden veggie goodness baked right in.